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Pathways

Significant pathways lists were computed using the ActivePathways method which takes the p-values of genes in a pathway into consideration; this is a more powerful and stringent approach compared to ranking pathways by the number of significant genes alone (see Pathways with significant genes column), which was used in the initial release of ActiveDriverDB (and is still provided for reference).

 

Mutations PTM type Significant pathways list Pathways* Pathways with significant genes Corresponding genes list Genes*
Clinical (ClinVar) all ActivePathways 999 Reactome pathways with significant genes Significant genes 701
Clinical (ClinVar) acetylation ActivePathways 26 Reactome pathways with significant genes Significant genes 45
Clinical (ClinVar) glycosylation ActivePathways 15 Reactome pathways with significant genes Significant genes 26
Clinical (ClinVar) methylation ActivePathways 23 Reactome pathways with significant genes Significant genes 70
Clinical (ClinVar) phosphorylation ActivePathways 821 Reactome pathways with significant genes Significant genes 429
Clinical (ClinVar) ubiquitination ActivePathways 281 Reactome pathways with significant genes Significant genes 308
Cancer (TCGA PanCancerAtlas) all ActivePathways 761 Reactome pathways with significant genes Significant genes 2841
Cancer (TCGA PanCancerAtlas) acetylation ActivePathways 165 Reactome pathways with significant genes Significant genes 69
Cancer (TCGA PanCancerAtlas) glycosylation ActivePathways 22 Reactome pathways with significant genes Significant genes 29
Cancer (TCGA PanCancerAtlas) methylation ActivePathways 64 Reactome pathways with significant genes Significant genes 177
Cancer (TCGA PanCancerAtlas) phosphorylation ActivePathways 582 Reactome pathways with significant genes Significant genes 1857
Cancer (TCGA PanCancerAtlas) sumoylation ActivePathways 1 Reactome pathways with significant genes Significant genes 52
Cancer (TCGA PanCancerAtlas) ubiquitination ActivePathways 460 Reactome pathways with significant genes Significant genes 978
Cancer (PCAWG) all ActivePathways 490 Reactome pathways with significant genes Significant genes 1592
Cancer (PCAWG) acetylation ActivePathways 24 Reactome pathways with significant genes Significant genes 26
Cancer (PCAWG) glycosylation ActivePathways 2 Reactome pathways with significant genes Significant genes 5
Cancer (PCAWG) methylation ActivePathways 3 Reactome pathways with significant genes Significant genes 30
Cancer (PCAWG) phosphorylation ActivePathways 363 Reactome pathways with significant genes Significant genes 872
Cancer (PCAWG) ubiquitination ActivePathways 251 Reactome pathways with significant genes Significant genes 563
Clinical (ClinVar) phosphorylation (SARS-CoV-2) No results 0 Reactome pathways with significant genes Significant genes 2
Clinical (ClinVar) succinylation No results 0 Reactome pathways with significant genes Significant genes 2
Clinical (ClinVar) sumoylation No results 0 Reactome pathways with significant genes Significant genes 17
Cancer (TCGA PanCancerAtlas) phosphorylation (SARS-CoV-2) No results 0 Reactome pathways with significant genes Significant genes 2
Cancer (TCGA PanCancerAtlas) succinylation No results 0 Reactome pathways with significant genes Significant genes 3
Cancer (PCAWG) phosphorylation (SARS-CoV-2) No results 0 Reactome pathways with significant genes Significant genes 1
Cancer (PCAWG) succinylation No results 0 Reactome pathways with significant genes Significant genes 0
Cancer (PCAWG) sumoylation No results 0 Reactome pathways with significant genes Significant genes 26

Alternatively, you can browse a list of all pathways.

*) number of significant pathways/genes on the list